Plotting

Plotting#

pl.autok_stability(autok[, save, return_ax])

Plot the clustering stability.

pl.diff_nhood_enrichment(adata, cluster_key, ...)

Plot the difference in neighborhood enrichment between conditions.

pl.enrichment(adata, group_key, label_key[, ...])

Plot a dotplot of the enrichment of label_key in group_key.

pl.nhood_enrichment(adata, cluster_key[, ...])

A modified version of squidpy's function for plotting neighborhood enrichment.

pl.proportion(adata, group_key, label_key[, ...])

Plot the proportion of y_key in x_key.

pl.boundaries(adata, sample[, library_key, ...])

Plot the boundaries of the clusters.

pl.shape_metrics(adata, condition_key[, ...])

Boxplots of the shape metrics between two conditions.