Tools

tl.boundaries(adata[, cluster_key, ...])	Compute the topological boundaries of sets of cells.
tl.Cluster([n_clusters, covariance_type, ...])	Cluster cells or spots based on the neighborhood aggregated features from CellCharter.
tl.ClusterAutoK(n_clusters[, max_runs, ...])	Identify the best candidates for the number of clusters.
tl.curl(adata[, cluster_key, out_key, copy])	Compute the curl score of the topological boundaries of sets of cells.
tl.elongation(adata[, cluster_key, out_key, ...])	Compute the elongation of the topological boundaries of sets of cells.
tl.linearity(adata[, cluster_key, out_key, ...])	Compute the linearity of the topological boundaries of sets of cells.
tl.purity(adata[, cluster_key, library_key, ...])	Compute the purity of the topological boundaries of sets of cells.
tl.TRVAE(adata[, condition_key, conditions, ...])