Index A | B | C | D | E | F | G | L | M | N | P | R | S | T A aggregate_neighbors() (in module cellcharter.gr) autok_stability() (in module cellcharter.pl) B best_k (cellcharter.tl.ClusterAutoK attribute) boundaries() (in module cellcharter.pl) (in module cellcharter.tl) C cellcharter.gr module, [1] cellcharter.pl module, [1] cellcharter.tl module, [1] clone() (cellcharter.tl.Cluster method) Cluster (class in cellcharter.tl) ClusterAutoK (class in cellcharter.tl) connected_components() (in module cellcharter.gr) converged_ (cellcharter.tl.Cluster attribute) curl() (in module cellcharter.tl) D diff_nhood_enrichment() (in module cellcharter.gr) (in module cellcharter.pl) E elongation() (in module cellcharter.tl) enrichment() (in module cellcharter.gr) (in module cellcharter.pl) F fit() (cellcharter.tl.Cluster method) (cellcharter.tl.ClusterAutoK method) fit_predict() (cellcharter.tl.Cluster method) G get_params() (cellcharter.tl.Cluster method) (cellcharter.tl.ClusterAutoK method) L labels (cellcharter.tl.ClusterAutoK attribute) linearity() (in module cellcharter.tl) load() (cellcharter.tl.Cluster class method) (cellcharter.tl.ClusterAutoK class method) (cellcharter.tl.TRVAE class method) load_attributes() (cellcharter.tl.Cluster method) load_parameters() (cellcharter.tl.Cluster class method) M model_ (cellcharter.tl.Cluster attribute) module cellcharter.gr, [1] cellcharter.pl, [1] cellcharter.tl, [1] N nhood_enrichment() (in module cellcharter.gr) (in module cellcharter.pl) nll_ (cellcharter.tl.Cluster attribute) num_iter_ (cellcharter.tl.Cluster attribute) P peaks (cellcharter.tl.ClusterAutoK attribute) persistent_attributes (cellcharter.tl.Cluster attribute) (cellcharter.tl.ClusterAutoK attribute) predict() (cellcharter.tl.Cluster method) (cellcharter.tl.ClusterAutoK method) predict_proba() (cellcharter.tl.Cluster method) proportion() (in module cellcharter.pl) purity() (in module cellcharter.tl) R remove_intra_cluster_links() (in module cellcharter.gr) remove_long_links() (in module cellcharter.gr) S sample() (cellcharter.tl.Cluster method) save() (cellcharter.tl.Cluster method) (cellcharter.tl.ClusterAutoK method) save_attributes() (cellcharter.tl.Cluster method) save_parameters() (cellcharter.tl.Cluster method) score() (cellcharter.tl.Cluster method) score_samples() (cellcharter.tl.Cluster method) set_params() (cellcharter.tl.Cluster method) (cellcharter.tl.ClusterAutoK method) shape_metrics() (in module cellcharter.pl) stability (cellcharter.tl.ClusterAutoK attribute) T trainer() (cellcharter.tl.Cluster method) TRVAE (class in cellcharter.tl)