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API
Graph
cellcharter.gr.aggregate_neighbors
cellcharter.gr.connected_components
cellcharter.gr.diff_nhood_enrichment
cellcharter.gr.enrichment
cellcharter.gr.nhood_enrichment
cellcharter.gr.remove_long_links
cellcharter.gr.remove_intra_cluster_links
Tools
cellcharter.tl.boundaries
cellcharter.tl.Cluster
cellcharter.tl.ClusterAutoK
cellcharter.tl.curl
cellcharter.tl.elongation
cellcharter.tl.linearity
cellcharter.tl.purity
cellcharter.tl.TRVAE
Plotting
cellcharter.pl.autok_stability
cellcharter.pl.diff_nhood_enrichment
cellcharter.pl.enrichment
cellcharter.pl.nhood_enrichment
cellcharter.pl.proportion
cellcharter.pl.boundaries
cellcharter.pl.shape_metrics
Tutorials
Spatial clustering of CODEX spatial proteomics data
Spatial clustering of Nanostring CosMx spatial transcriptomics data
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